| PATENT NUMBER | This data is not available for free |
| PATENT GRANT DATE | March 14, 2000 |
| PATENT TITLE |
I.kappa.BEGFP constructs, cell lines and methods of use |
| PATENT ABSTRACT | The present invention provides fusion protein comprising I.kappa.B and green fluorescent protein. Also provided is DNA encoding this protein and vector expressing such DNA and various methods of using a fusion protein comprising I.kappa.B and green fluorescent protein. |
| PATENT INVENTORS | This data is not available for free |
| PATENT ASSIGNEE | This data is not available for free |
| PATENT FILE DATE | April 17, 1998 |
| PATENT REFERENCES CITED |
Yang et al, Optimized codon usage and chromophore mutations provide enhanced sensitivity with the green fluorescent protein, Nucleic acid research, vol. 24 pp. 4592-4593, 1996. Cormack et al, FACS-optimized mutants of the green fluorescent protein (GFP), Gene, vol. 173, pp. 33-38, 1996. |
| PATENT CLAIMS |
What is claimed is: 1. A fusion protein for measuring degradation of I.kappa.B in vitro, comprising I.kappa.B and green fluorescent protein. 2. The green fluorescent protein of claim 1, wherein said protein is a wild type green fluorescent protein. 3. The green fluorescent protein of claim 1, wherein said protein is a humanized green fluorescent protein. 4. The green fluorescent protein of claim 1, wherein said protein is an enhanced green fluorescent protein. -------------------------------------------------------------------------------- |
| PATENT DESCRIPTION |
BACKGROUND OF THE INVENTION 1. Field of the Invention The present invention relates generally to the fields of protein chemistry and biochemical assays and reagents. More specifically, the present invention relates to modified fluorescent proteins and to methods for their use. 2. Description of the Related Art The Green Fluorescent Protein (GFP) from the jellyfish Aequorea Victoria has been widely used as a reporter in the determination of gene expression and protein localization (1-4). GFP cDNA can be expressed in various cells or organisms with an easily detected fluorescence in the absence of any substrate or cofactor (5). GFP is a 27-kDa, single-chain polypeptide of 238 amino acids (6). A key sequence of Ser-Tyr-Gly at amino acids 65 to 67 near the N terminus functions as the GFP fluorophore (7). These three amino acids undergo spontaneous oxidation to form a cyclized chromophore responsible for the fluorescence of GFP (8). Enhanced GFP (EGFP) is a mutant of GFP with a 35-fold increase in fluorescence (9-11). This variant has mutations of Ser to Thr at amino acid 65 and Phe to Leu at position 64, and is encoded by a gene with optimized human codons (10). Because of its easily detectable green fluorescence, green fluorescent protein from the jellyfish Aequorea Victoria has been used widely to study gene expression and protein localization. GFP fluorescence does not require a substrate or cofactor; hence, it is possible to use this reporter in numerous species and in a wide variety of cells. GFP is a very stable protein, and can accumulate; thus, GFP is often toxic to mammalian cells. Recently, crystallographic structures of wild-type GFP and the mutant GFP S65T reveal that the GFP tertiary structure resembles a barrel (Ormo et al. (1996) Science 273: 1392-1395; Yang, F., Moss, L. G., and Phillips, G. N., Jr. (1996) Nature Biotech 14: 1246-1251). The barrel consists of beta sheets in a compact antiparallel structure. In the center of the barrel, an alpha helix containing the chromophore is shielded by the barrel. The compact structure makes GFP very stable under diverse and/or harsh conditions, such as protease treatment. A great deal of research is being performed currently to improve the properties of GFP and to produce GFP reagents useful for a variety of research purposes. New versions of GFP have been developed via mutation, including a "humanized" GFP DNA, the protein product of which enjoys increased synthesis and improved folding in mammalian cells (see Cormack, B. P., Valdivia, R. H., and Falkow, S. (1996) Gene 173, 33-38; Haas, J., Park., E. C., and Seed, B. (1996) Current Biology 6, 315-324; and Yang, T. T., Cheng, L., Kain, S. R. (1996) Nucleic Acids Research 24, 4592-4593). One such humanized protein is "enhanced green fluorescent protein" (EGFP). Other mutations to GFP have resulted in blue- and red-fluorescent light emitting versions. Cells are capable of responding to various stimuli by activating or repressing the expression of particular genes whose products exert a wide range of effects on biological processes. Such stimuli include heat shock, steroid hormone, growth factors, cytokines, etc. The process of gene transcription itself is the major point for regulation, although gene expression can be regulated at the post-transcriptional level. The external signals or stimuli may affect gene expression via regulation of transcriptional factors in a process called signal transduction. External signals exert influence by, for example, inducing conformational changes in these factors, modifying them chemically, or directing formation of ligand/protein complexes. The dissection of signal transduction pathways provide important information for the drug discovery and design. A number of important signal transduction pathways require the activation of transcription factor NF-kB. Compounds affecting NF-kB activation includetumor necrosis factor .alpha. (TNF.alpha.), interleukin 1.beta. (IL-1), liposaccharide (LPS), and phorbel ester (PMA). The activation of NF-kB leads to induction of a large array of genes whose products contribute diverse important biological processes, such as cell growth, apoptosis, inflammation, and immune responses. NFkB is the prototype of a family of dimeric transcription factors. It consists of p50(NFkB1), p52(NFkB2), RelA(p65), RelB, c-Rel. The Rel/NFkB family of proteins share an approxomately 300-amino acid Rel region that binds to DNA, interacts with each other, and binds its inhibitor, IkB. There are at least six species IkB proteins that are identified to associate with NFkB/Rel proteins. All IkB proteins have 5-7 ankyrin repeat domains, each with a length of about 30 amino acids, that interact with the NFkB Rel region. The mechanism of NFkB activation has been well documented. NFkB is present in an inactive form in the cytoplasm where it is bound to IKB. Cellular activation in response to a variety of inducers leads to the rapid release of NFkB from IkB. This activation is independent on protein synthesis. In response to diverse stimuli, an intracellular cascade of protein kinase activity is triggered, and IkB is phosphorylated at two serines (Ser 32 and Ser 36) specifically and degraded rapidly by 26S proteasome. Uncomplexed NFkB rapidly translocates to the nucleus where transcriptional activation of gene expression occurs within minutes. The search for agonists or antagonists that can activate or inhibit NFkB are major drug targets for pharmaceutical companies. Two very common methods used for studying the activation of gene expression are the in vitro gel shift assay or assays involving in vivo transcriptional induction of a reporter. Because the mechanism of NFicB activation is well defined, a number of assays based on the activation pathway have been designed and used to monitor NFkB-induced gene expression. The assays include measuring phosphorylation of IkB, degradation of IkB, and ubiquitination of IkB. These assays are often used in the research labs; however, for large scale drug screening, the assays are either time consuming or tedious. The prior art is deficient in an methods and research tools for easy, high throughput assays for measuring degradation of IkB. The present invention satisfies this long-standing need in the art. SUMMARY OF THE INVENTION The fusion protein consisting of IkB and humanized green fluorescent protein of the present invention provides a research tool for measuring degradation of IkB in a straightforward manner. Cells expressing this fusion protein maintain GFP-induced fluoresce as long as the degradation of IkB has not been triggered. However, as soon as external factors induce phosphorylation of IkB triggering IkB degradation, the IkB portion of the fusion protein is degraded, and the GFP portion of the fusion ceases to fluoresce. Thus, the IkB-EGFP fusion protein provides a tool for a direct, visual assay of IkB degradation. Such an assay is applicable in high throughput formats. The present invention provides an IkBEGFP fusion protein wherein fluorescence of the fusion protein is dependent upon the IkB portion of the fusion protein being intact. In one embodiment, there is provided a fusion protein comprising an IkB fused to a GFP. In yet another aspect of the invention, there is provided an isolated DNA molecule encoding an IkB/GFP fusion protein wherein fluorescence of the fusion protein is dependent upon the IkB portion of the fusion protein being intact. In one embodiment of this aspect of the invention, the isolated DNA molecule encoding the GFP portion of the fusion protein is humanized. Further, the present invention provides a vector capable of expressing the isolated DNA molecule encoding the IkB/GFP fusion protein wherein fluorescence of the fusion protein is dependent upon the IkB portion of the fusion protein being intact. In one embodiment of the vector, the vector contains an inducible promoter. In another aspect of the invention, there is provided a mammalian cell stably-transfected with a DNA expressing the IkB/GFP fusion protein of the present invention. In yet another aspect of the invention, there are provided assays for determining agonists or antagonists that activate or inhibit NFkB via measuring degradation of IkB. In one embodiment of this aspect, there is provided a method of determining activation of NFkB by a compound of interest, comprising the steps of: introducing into a cell a vector expressing an isolated DNA molecule encoding an IkB-GFP fusion protein; contacting said cell with said compound of interest; measuring the amount of GFP-induced fluorescence, wherein a decrease in GFP-induced fluorescence by said compound indicates that said compound activates NFkB. Generally, the decrease in GFP-induced fluorescence is directly proportional to the degradation of IkB. BRIEF DESCRIPTION OF THE DRAWINGS So that the matter in which the above-recited features, advantages and objects of the invention, as well as others which will become clear, are attained and can be understood in detail, more particular descriptions of the invention briefly summarized above may be had by reference to certain embodiments thereof which are illustrated in the appended drawings. These drawings form a part of the specification. It is to be noted, however, that the appended drawings illustrate preferred embodiments of the invention and therefore are not to be considered limiting in their scope. FIG. 1 shows a is a schematic of a vector which expresses one embodiment of the IkB/GFP fusion protein of the present invention. FIG. 2 illustrates the decrease in fluorescence after treatment with TNF-alpha in Hela tet-off cells stably transfected with a vector which expresses an IkB/GFP fusion protein. Cells were treated with TNF-alpha and examined at 0, 10, 20 and 30 minutes. Fluorescence was observed in cells at 0 and 10 minutes, but not at 20 or 30 minutes. FIG. 3 shows the results flow cytometric analysis of Hela tet-off cells stably transfected with a vector which expresses an IkB/GFP fusion protein. Again, cells were treated with TNF-alpha and aliquots were tested for fluorescence at the indicated time points. Results indicate that the half life of the IkBEGFP fusion protein is approximately 15 minutes. FIG. 4 is a western blot of protein extracts from Hela tet-off cells stably transfected with a vector which expresses an IkB/GFP fusion protein, using a monoclonal antibody against GFP. The size of the fusion protein is 65 kDa, as expected. Presence of the fusion protein declined upon treatment with TNF-alpha. DETAILED DESCRIPTION OF THE INVETION The present invention provides a fusion protein consisting of IkB/GFP and assays to monitor NFkB activation by determining cellular fluorescence using this fusion protein. As a result of expressing the IkB/GFP fusion protein, fluorescence in these cells corresponds directly with existence of intact IkB, which, in turn, corresponds directly to the state of NFkB activation. Upon exposure of these cells to various stimuli in which degradation of IkB is induced, degradation of the GFP portion of the fusion protein is triggered as well. Degradation of the fusion protein can be measured directly by determining the change in fluorescence of transfected cells. As used herein, the term "GFP" refers to the basic green fluorescent protein from Aequorea Victoria, including prior art versions of GFP engineered to provide greater fluorescence or fluoresce in different colors. The sequence of A. Victoria GFP has been disclosed in Prasher D. C. et al (1992) Gene 111:229-33. As used herein, the term "EGFP" refers to GFP which has been "humanized", as reported in Kain et al. (1995) Biotechniques 19(4):650-55. "Humanized" refers to changes made to the GFP nucleic acid sequence to optimize the codons for expression of the protein in human cells. As used herein, the term "half life" refers to the period of time in which half of the fluorescent signal from a fluorescent protein expressed in cells disappears and half remains. As used herein, the term "humanized" refers to engineering a DNA sequence coding for a protein such that the codons are optimized for translation in higher eukaryotes. In accordance with the present invention there may be employed conventional molecular biology, microbiology, and recombinant DNA techniques within the skill of the art. Such techniques are explained fully in the literature. See, e.g., Maniatis, Fritsch & Sambrook, "Molecular Cloning: A Laboratory Manual (1982); "DNA Cloning: A Practical Approach," Volumes I and II (D. N. Glover ed. 1985); "Oligonucleotide Synthesis" (M. J. Gait ed. 1984); "Nucleic Acid Hybridization" (B. D. Hames & S. J. Higgins eds. (1985)); "Transcription and Translation" (B. D. Hames & S. J. Higgins eds. (1984)); "Animal Cell Culture" (R. I. Freshney, ed. (1986)); "Immobilized Cells and Enzymes" (IRL Press, (1986)); B. Perbal, "A Practical Guide To Molecular Cloning" (1984). A "vector" is a replicon, such as plasmid, phage or cosmid, to which another DNA segment may be attached so as to bring about the replication of the attached segment. A "DNA molecule" refers to the polymeric form of deoxyribonucleotides (adenine, guanine, thymine, or cytosine) in either single stranded form or a double-stranded helix. This term refers only to the primary and secondary structure of the molecule, and does not limit it to any particular tertiary forms. Thus, this term includes double-stranded DNA found, inter alia, in linear DNA molecules (e.g., restriction fragments), viruses, plasmids, and chromosomes. A DNA "coding sequence" is a DNA sequence which is transcribed and translated into a polypeptide in vivo when placed under the control of appropriate regulatory sequences. The boundaries of the coding sequence are determined by a start codon at the 5'(amino) terminus and a translation stop codon at the 3' (carboxyl) terminus. A coding sequence can include, but is not limited to, prokaryotic sequences, cDNA from eukaryotic mRNA, genomic DNA sequences from eukaryotic (e.g., mammalian) DNA, and synthetic DNA sequences. A polyadenylation signal and transcription termination sequence may be located 3' to the coding sequence. Transcriptional and translational control sequences are DNA regulatory sequences, such as promoters, enhancers, polyadenylation signals, terminators, and the like, that provide for and/or regulate expression of a coding sequence in a host cell. A "promoter sequence" is a DNA regulatory region capable of binding RNA polymerase in a cell and initiating transcription of a downstream (3' direction) coding sequence. Generally, the promoter sequence is bounded at its 3' terminus by the transcription initiation site and extends upstream (5' direction) to include the minimum number of bases or elements necessary to initiate transcription at levels detectable above background. Within the promoter sequence will be found a transcription initiation site, as well as protein binding domains responsible for the binding of RNA polymerase. Eukaryotic promoters will often, but not always, contain "TATA" boxes and "CAT" boxes. Various promoters, including inducible promoters, may be used to drive the various vectors of the present invention. As used herein, the terms "restriction endonucleases" and "restriction enzymes" refer to bacterial enzymes, each of which cut double-stranded DNA at or near a specific nucleotide sequence. A cell has been "transformed" or "transfected" by exogenous or heterologous DNA when such DNA has been introduced inside the cell. The transforming DNA may or may not be integrated (covalently linked) into the genome of the cell. In prokaryotes, yeast, and mammalian cells for example, the transforming DNA may be maintained on an episomal element such as a plasmid. With respect to eukaryotic cells, a stably transformed cell is one in which the transforming DNA has become integrated into a chromosome so that it is inherited by daughter cells through chromosome replication. This stability is demonstrated by the ability of the eukaryotic cell to establish cell lines or clones comprised of a population of daughter cells containing the transforming DNA. A "clone" is a population of cells derived from a single cell or common ancestor by mitosis. A "cell line" is a clone of a primary cell that is capable of stable growth in vitro for many generations. A "heterologous" region of the DNA construct is an identifiable segment of DNA within a larger DNA molecule that is not found in association with the larger molecule in nature. Thus, when the heterologous region encodes a mammalian gene, the gene will usually be flanked by DNA that does not flank the mammalian genomic DNA in the genome of the source organism. In another example, heterologous DNA includes coding sequence in a construct where portions of genes from two different sources have been brought together so as to produce a fusion protein product. Allelic variations or naturally-occurring mutational events do not give rise to a heterologous region of DNA as defined herein. As used herein, the term "promoter" refers to any nucleic acid sequence whose regulation affects expression and production of the green fluorescent protein of the present invention. Transcriptional and translational control sequences are DNA regulatory sequences, such as promoters, enhancers, polyadenylation signals, terminators, and the like, which provide for the expression of a coding sequence in a host cell. The amino acids described herein are preferred to be in the "L" isomeric form. However, residues in the "D" isomeric form can be substituted for any L-amino acid residue, as long as the desired functional property of immunoglobulin-binding is retained by the polypeptide. NH.sub.2 refers to the free amino group present at the amino terminus of a polypeptide. COOH refers to the free carboxy group present at the carboxy terminus of a polypeptide. In keeping with standard polypeptide nomenclature, J Biol. Chem., 243:3552-59 (1969), abbreviations for amino acid residues are shown in the following Table of Correspondence: ______________________________________ Y Tyr tyrosine G Gly glycine F Phe Phenylalanine M Met methionine A Ala alanine S Ser serine I Ile isoleucine L Leu leucine T Thr threonine V Val valine P Pro proline K Lys lysine H His histidine Q Gln glutamine E Glu glutamic acid W Trp tryptophan R Arg arginine D Asp aspartic acid N Asn asparagine C Cys cysteine ______________________________________ All amino-acid residue sequences are represented herein by formulae whose left and right orientation is in the conventional direction of amino-terminus to carboxy-terminus. Furthermore, it should be noted that a dash at the beginning or end of an amino acid residue sequence indicates a peptide bond to a further sequence of one or more amino-acid residues. The above Table is presented to correlate the three-letter and one-letter notations which may appear alternately herein. The present invention discloses a fusion protein comprising IkB and green fluorescent protein. In one aspect, the protein is a wild type green fluorescent protein. In another aspect, the protein is a humanized green fluorescent protein. Preferably, the protein is an enhanced green fluorescent protein. The present invention is also directed to an isolated DNA molecule encoding an IkB/GFP fusion protein. In addition, the present invention describes a vector capable of expressing this isolated DNA molecule. Further, the present invention is directed to a cell line transfected with this vector. The present invention is also directed to a method of determining activation of NFkB by a compound of interest, comprising the steps of introducing into a cell a vector expressing an isolated DNA molecule encoding an IkB-GFP fusion protein; contacting said cell with said compound of interest; and measuring the amount of GFP-induced fluorescence, wherein a decrease in GFP-induced fluorescence by said compound indicates that said compound activates NFkB. The decrease in GFP-induced fluorescence is directly proportional to the degradation of IkB. |
| PATENT EXAMPLES | available on request |
| PATENT PHOTOCOPY | available on request |
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